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Cellxgene Census

원문: cellxgene-census

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.

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CZ CELLxGENE Census Overview The CZ CELLxGENE Census provides programmatic access to a comprehensive, versioned collection of standardized single cell genomics data from CZ CELLxGENE Discover. This skill enables efficient querying and analysis of millions of cells across thousands of datasets. The Census includes: 61+ million cells from human and mouse Standardized metadata (cell types, tissues, diseases, donors) Raw gene expression matrices Pre calculated embeddings and statistics Integration with PyTorch, scanpy, and other analysis tools When to Use This Skill This skill should be used when: Querying single cell expression data by cell type, tissue, or disease Exploring available single ce

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