Deeptools
원문: deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
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deepTools: NGS Data Analysis Toolkit Overview deepTools is a comprehensive suite of Python command line tools designed for processing and analyzing high throughput sequencing data. Use deepTools to perform quality control, normalize data, compare samples, and generate publication quality visualizations for ChIP seq, RNA seq, ATAC seq, MNase seq, and other NGS experiments. Core capabilities: Convert BAM alignments to normalized coverage tracks (bigWig/bedGraph) Quality control assessment (fingerprint, correlation, coverage) Sample comparison and correlation analysis Heatmap and profile plot generation around genomic features Enrichment analysis and peak region visualization When to Use This S…
실행 시 본인 API 키(BYOK)로 동작하며, 모델 비용은 사용자 계정에서 직접 결제됩니다.