Scikit Bio
원문: scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
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scikit bio Overview scikit bio is a comprehensive Python library for working with biological data. Apply this skill for bioinformatics analyses spanning sequence manipulation, alignment, phylogenetics, microbial ecology, and multivariate statistics. When to Use This Skill This skill should be used when the user: Works with biological sequences (DNA, RNA, protein) Needs to read/write biological file formats (FASTA, FASTQ, GenBank, Newick, BIOM, etc.) Performs sequence alignments or searches for motifs Constructs or analyzes phylogenetic trees Calculates diversity metrics (alpha/beta diversity, UniFrac distances) Performs ordination analysis (PCoA, CCA, RDA) Runs statistical tests on biologica…
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